Scientific Publications
2026
Ultrasensitive Cas13a-graphene field effect transistor-based bioelectronics for early monitoring of fire blight
Shabbir, Maryam, et al. "Ultrasensitive Cas13a-graphene field effect transistor-based bioelectronics for early monitoring of fire blight." Sensors and Actuators B: Chemical 466 (2026): 140357.
Novel Antarctic chemolithotroph drives iron biomineralization
Yoon, Jaekyung, et al. "Novel Antarctic chemolithotroph drives iron biomineralization." Microbiome 14.1 (2026): 225.
Mouth-to-gut microbial transmission signatures enable robust, non-invasive diagnosis of gastrointestinal cancers
Jang, Lae-Guen, et al. "Mouth-to-gut microbial transmission signatures enable robust, non-invasive diagnosis of gastrointestinal cancers." Cell Host & Microbe 34.9 (2026): 1829-1842.e5.
Microbial metabolic configuration modulates plant growth–defense transcriptional responses in Nicotiana benthamiana
Kim, Seung-A, et al. "Microbial metabolic configuration modulates plant growth–defense transcriptional responses in Nicotiana benthamiana." Plant Growth Regulation 106.1 (2026): 69.
A CRISPR-Cas13a-Based Amplification- and Extraction-Free Fire Blight Diagnostic System
Cho, Ye Ram, et al. "A CRISPR-Cas13a-Based Amplification- and Extraction-Free Fire Blight Diagnostic System." The Plant Pathology Journal 42.1 (2026): 93-102.
metaFun: An analysis pipeline for metagenomic big data with fast and unified functional searches
Lee, Hyeon Gwon, et al. "metaFun: An analysis pipeline for metagenomic big data with fast and unified functional searches." Gut Microbes 18.1 (2026): 2611544.
2025
Polyphasic and comparative genomic characterization of a novel Mariniflexile species in the rhizosphere microbiome of tomato resistant to bacterial wilt
Kwak, Min-Jung, et al. "Polyphasic and comparative genomic characterization of a novel Mariniflexile species in the rhizosphere microbiome of tomato resistant to bacterial wilt." Scientific Reports 15.1 (2025): 36158.
Genomic Epidemiology of Erwinia amylovora Strains that Caused the Fire Blight Outbreak in Korea
Song, Ju Yeon, et al. "Genomic Epidemiology of Erwinia amylovora Strains that Caused the Fire Blight Outbreak in Korea." Plant Disease 109.7 (2025): 1509-1516.
2024
Rhizobacterial syntrophy between a helper and a beneficiary promotes tomato plant health
Lee, Sang-Moo, et al. "Rhizobacterial syntrophy between a helper and a beneficiary promotes tomato plant health." The ISME Journal 18.1 (2024): wrae120.
In the news뉴시스
2023
A Marine Bacterium with Animal-Pathogen-Like Type III Secretion Elicits the Nonhost Hypersensitive Response in a Land Plant
Lee, Boyoung, et al. "A Marine Bacterium with Animal-Pathogen-Like Type III Secretion Elicits the Nonhost Hypersensitive Response in a Land Plant." The Plant Pathology Journal 39.6 (2023): 584-591.
2022
Gut microbiota of the young ameliorates physical fitness of the aged in mice
Kim, Kwang H., et al. "Gut microbiota of the young ameliorates physical fitness of the aged in mice." Microbiome 10.1 (2022): 238.
In the newsFight Aging!
Transcriptional Potential Determines the Adaptability of Escherichia coli Strains with Different Fitness Backgrounds
Kim, Kitae, et al. "Transcriptional Potential Determines the Adaptability of Escherichia coli Strains with Different Fitness Backgrounds." Microbiology Spectrum 10.6 (2022): e02528-22.
Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer
Huh, Ji-Won, et al. "Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer." Microbiome 10.1 (2022): 203.
Escherichia coli cell factories with altered chromosomal replication scenarios exhibit accelerated growth and rapid biomass production
Yang, Hee Jin, et al. "Escherichia coli cell factories with altered chromosomal replication scenarios exhibit accelerated growth and rapid biomass production." Microbial Cell Factories 21.1 (2022): 125.
Human gastric microbiota transplantation recapitulates premalignant lesions in germ-free mice
Kwon, Soon-Kyeong, et al. "Human gastric microbiota transplantation recapitulates premalignant lesions in germ-free mice." Gut 71.7 (2022): 1266-1276.
2021
Genome information of the cellulolytic soil actinobacterium Isoptericola dokdonensis DS-3 and comparative genomic analysis of the genus Isoptericola
Bae, Yurim, et al. "Genome information of the cellulolytic soil actinobacterium Isoptericola dokdonensis DS-3 and comparative genomic analysis of the genus Isoptericola." Journal of Microbiology 59.11 (2021): 1010-1018.
Flavobacterium dauae sp. nov., isolated from rhizosphere soil of a tomato plant
Jung, Eun Joo, et al. "Flavobacterium dauae sp. nov., isolated from rhizosphere soil of a tomato plant." International Journal of Systematic and Evolutionary Microbiology 71.10 (2021).
A synthetic probiotic engineered for colorectal cancer therapy modulates gut microbiota
Chung, Yusook, et al. "A synthetic probiotic engineered for colorectal cancer therapy modulates gut microbiota." Microbiome 9.1 (2021): 122.
Genome Analysis of Erwinia amylovora Strains Responsible for a Fire Blight Outbreak in Korea
Song, Ju Yeon, et al. "Genome Analysis of Erwinia amylovora Strains Responsible for a Fire Blight Outbreak in Korea." Plant Disease 105.4 (2021): 1143-1152.
2020
Reverse Engineering Targets for Recombinant Protein Production in Corynebacterium glutamicum Inspired by a Fast-Growing Evolved Descendant
Lee, Min Ju, et al. "Reverse Engineering Targets for Recombinant Protein Production in Corynebacterium glutamicum Inspired by a Fast-Growing Evolved Descendant." Frontiers in Bioengineering and Biotechnology 8 (2020): 588070.
Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation
Lee, Younmi, et al. "Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation." Scientific reports 10.1 (2020): 1-12.
Alterations in gastric microbial communities are associated with risk of gastric cancer in a Korean population: A case-control study
Gunathilake, Madhawa, et al. "Alterations in Gastric Microbial Communities Are Associated with Risk of Gastric Cancer in a Korean Population: A Case-Control Study." Cancers 12.9 (2020): 2619.
Accelerated Growth of Corynebacterium glutamicum by Up-Regulating Stress- Responsive Genes Based on Transcriptome Analysis of a Fast-Doubling Evolved Strain
Park, Jihoon, et al. "Accelerated growth of Corynebacterium glutamicum by up-regulating stress-responsive genes based on transcriptome analysis of a fast-doubling evolved strain." Journal of Microbiology and Biotechnology (2020).
Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins
Kwon, Soon-Kyeong, Sung-Hoon Jun, and Jihyun F. Kim. "Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins." Journal of Microbiology and Biotechnology 30.5 (2020): 633-641.
Bioinformatics services for analyzing massive genomic datasets
Ko, Gunhwan, et al. "Bioinformatics services for analyzing massive genomic datasets." Genomics & Informatics 18.1 (2020).
2019
Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity
Lee, Youngjin, et al. "Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity." Proceedings of the National Academy of Sciences 116.36 (2019): 18031-18040.
Consent insufficient for data release Response
Amann, Rudolf I., et al. "Consent insufficient for data release—Response." Science 364.6439 (2019): 446-446.
Data access: Toward unrestricted use of public genomic data
Amann, Rudolf I., et al. "Toward unrestricted use of public genomic data." Science 363.6425 (2019): 350-352.
2018
Rhizosphere microbiome structure alters to enable wilt resistance in tomato.
Kwak MJ, Kong HG, Choi K, Kwon SK, Song JY, Lee J, Lee PA, Choi SY, Seo M, Lee HJ, Jung EJ, Park H, Roy N, Kim H, Lee MM, Rubin EM, Lee SW, Kim JF. Nat Biotechnol. (2018)
2017
Genome Information of Maribacter dokdonensis DSW-8 and Comparative Analysis with Other Maribacter Genomes.
Kwak MJ, Lee J, Kwon SK, Kim JF.
J Microbiol Biotechnol. (2017)
Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5.
Yoon K, Song JY, Kwak MJ, Kwon SK, Kim JF.
J Microbiol. (2017)
Complete genome sequence of the sand-sediment actinobacterium Nocardioides dokdonensis FR1436T.
Kwak MJ, Kwon SK, Kim JF.
Stand Genomic Sci. (2017)
Tunable Control of an Escherichia coli Expression System for the Overproduction of Membrane Proteins by Titrated Expression of a Mutant lac Repressor.
Kim SK, Lee DH, Kim OC, Kim JF, Yoon SH.
ACS Synth Biol. (2017)
Genomic and transcriptomic landscape of Escherichia coli BL21(DE3).
Kim S, Jeong H, Kim EY, Kim JF, Lee SY, Yoon SH.
Nucleic Acids Res. (2017)
2016
Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function
Kwak MJ, Kwon SK, Yoon JK, Song JY, Seo JG, Chung MJ, Kim JF.
Syst Appl Microbiol. (2016)
Genome Sequence of Porphyrobacter dokdonensis DSW-74(T), Isolated from Seawater off Dokdo in the East Sea (Sea of Korea)
Song JY, Hong J, Kwak MJ, Kwon SK, Kim JF.
Genome Announc. (2016)
Crystal structure and functional characterization of a light-driven chloride pump having an NTQ motif
Kim K, Kwon SK, Jun SH, Cha JS, Kim H, Lee W, Kim JF*, Cho HS*.
Nat Commun. (2016)
Complete Genome Sequence of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia donghaensis DSW-1(T), Isolated from Seawater off Dokdo in the East Sea (Sea of Korea)
Kim K, Kwon SK, Yoon JH, Kim JF.
Genome Announc. (2016)
Does the intestinal microbial community of Korean Crohn's disease patients differ from that of western patients?
Eun CS, Kwak MJ, Han DS, Lee AR, Park DI, Yang SK, Kim YS, Kim JF.
BMC Gastroenterol. (2016)
Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient.
Kwak MJ, Kim MS, Kwon SK, Cho SH, Kim JF.
Gut Pathog. (2016)
Complete genome sequence of Streptomyces venezuelae ATCC 15439, a promising cell factory for production of secondary metabolites.
Song JY, Yoo YJ, Lim SK, Cha SH, Kim JE, Roe JH, Kim JF, Yoon YJ.
J Biotechnol. (2016)
Microbial and biochemical basis of a Fusarium wilt-suppressive soil.
Cha JY, Han S, Hong HJ, Cho H, Kim D, Kwon Y, Kwon SK, Crüsemann M, Bok Lee Y, Kim JF, Giaever G, Nislow C, Moore BS, Thomashow LS, Weller DM, Kwak YS.
ISME J. (2016)
2015
Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea.
Kwak MJ, Kwon SK, Yoon JH, Kim JF.
Stand Genomic Sci. (2015)
Genome sequence of the marine flavobacterium Croceitalea dokdonensis DOKDO 023 that contains proton- and sodium-pumping rhodopsins.
Kwon SK, Lee HG, Kwak MJ, Kim JF.
Mar Genomics. (2015)
Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction.
Kwon SK, Kim SK, Lee DH, Kim JF.
Sci Rep. (2015)
Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant.
Kwak MJ, Yoon JK, Kwon SK, Chung MJ, Seo JG, Kim JF.
J Biotechnol. (2015)
Complete genome sequence of Bifidobacterium longum KCTC 12200BP, a probiotic strain promoting the intestinal health.
Kwon SK, Kwak MJ, Seo JG, Chung MJ, Kim JF.
J Biotechnol. (2015)
Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656.
Kwak MJ, Kwon SK, Cho SH, Kim JF.
Gut Pathog. (2015)
Growth retardation of Escherichia coli by artificial increase of intracellular ATP.
Na YA, Lee JY, Bang WJ, Lee HJ, Choi SI, Kwon SK, Jung KH, Kim JF, Kim P.
J Ind Microbiol Biotechnol. (2015)
PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands.
Yoon SH, Park YK, Kim JF.
Nucleic Acids Res. [Database issue] (2015)
2014
Genome information of Methylobacterium oryzae, a plant-probiotic methylotroph in the phyllosphere.
Kwak MJ, Jeong H, Madhaiyan M, Lee Y, Sa TM, Oh TK, Kim JF.
PLoS One. (2014)
Sulfitobacter geojensis sp. nov., Sulfitobacter noctilucae sp. nov., and Sulfitobacter noctilucicola sp. nov., isolated from coastal seawater.
Kwak MJ, Lee JS, Lee KC, Kim KK, Eom MK, Kim BK, Kim JF.
Int J Syst Evol Microbiol. (2014)
Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods.
Eun CS, Kim BK, Han DS, Kim SY, Kim KM, Choi BY, Song KS, Kim YS, Kim JF.
Helicobacter. (2014)
2013
An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis.
Lee HJ, Kim IJ, Kim JF, Choi IG, Kim KH.
Bioresour Technol. (2013)
Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.
Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK.
J Microbiol Biotechnol. (2013)
Charting microbial phenotypes in multiplex nanoliter batch bioreactors.
Dai J, Yoon SH, Sim HY, Yang YS, Oh TK, Kim JF, Hong JW.
Anal Chem. (2013)
Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.
Kwon SK, Kim BK, Song JY, Kwak MJ, Lee CH, Yoon JH, Oh TK, Kim JF.
Genome Biol Evol. (2013)
2012
Genome sequence of the agar-degrading marine bacterium Alteromonadaceae sp. strain G7.
Kwak MJ, Song JY, Kim BK, Chi WJ, Kwon SK, Choi S, Chang YK, Hong SK, Kim JF.
J Bacteriol. (2012)
Genome sequence of the thermotolerant yeast Kluyveromyces marxianus var. marxianus KCTC 17555.
Jeong H, Lee DH, Kim SH, Kim HJ, Lee K, Song JY, Kim BK, Sung BH, Park JC, Sohn JH, Koo HM, Kim JF.
Eukaryot Cell. (2012)
Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67.
Song JY, Kwak MJ, Lee KY, Kong HG, Kim BK, Kwon SK, Lee SW, Kim JF.
J Bacteriol. (2012)
Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.
Yu DS, Jeong H, Lee DH, Kwon SK, Song JY, Kim BK, Park MS, Ji GE, Oh TK, Kim JF.
J Bacteriol. (2012)
Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006.
Kwak MJ, Song JY, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Park SH, Kim JF.
J Bacteriol. (2012)
Genome sequence of an oligohaline hyperthermophilic archaeon, Thermococcus zilligii AN1, isolated from a terrestrial geothermal freshwater spring.
Kim BK, Lee SH, Kim SY, Jeong H, Kwon SK, Lee CH, Song JY, Yu DS, Kang SG, Kim JF.
J Bacteriol. (2012)
Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. strain JS.
Song JY, Kim HA, Kim JS, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Kim BS, Kim SH, Kwon SY, Kim JF.
J Bacteriol. (2012)
Genome sequence of the leaf-colonizing Bacterium Bacillus sp. strain 5B6, isolated from a cherry tree.
Kim BK, Chung JH, Kim SY, Jeong H, Kang SG, Kwon SK, Lee CH, Song JY, Yu DS, Ryu CM, Kim JF.
J Bacteriol. (2012)
Genome sequence of the Shiga toxin-producing Escherichia coli strain NCCP15657.
Kim BK, Song GC, Hong GH, Seong WK, Kim SY, Jeong H, Kang SG, Kwon SK, Lee CH, Song JY, Yu DS, Park MS, Cho SH, Kim JF.
J Bacteriol.(2012)
Genome sequence of enterohemorrhagic Escherichia coli NCCP15658.
Song JY, Yoo RH, Jang SY, Seong WK, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Park MS, Cho SH, Kim JF.
J Bacteriol.(2012)
Genome sequence of the hemolytic-uremic syndrome-causing strain Escherichia coli NCCP15647.
Jeong H, Zhao F, Igori D, Oh KH, Kim SY, Kang SG, Kim BK, Kwon SK, Lee CH, Song JY, Yu DS, Park MS, Cho SH, Kim JF.
J Bacteriol.(2012)
Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone.
Brulois KF, Chang H, Lee AS, Ensser A, Wong LY, Toth Z, Lee SH, Lee HR, Myoung J, Ganem D, Oh TK, Kim JF, Gao SJ, Jung JU.
J Virol. (2012)
Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches.
Yu DS, Lee DH, Kim SK, Lee CH, Song JY, Kong EB, Kim JF.
J Microbiol Biotechnol. (2012)
Comparative multi-omics systems analysis of Escherichia coli strains B and K-12.
Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, Kim JF.
Genome Biol. (2012)
2011
Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.
Kim BK, Jung MY, Yu DS, Park SJ, Oh TK, Rhee SK, Kim JF.
J Bacteriol. (2011)
Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.
Jeong H, Park SY, Chung WH, Kim SH, Kim N, Park SH, Kim JF.
J Bacteriol. (2011)
Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2.
Jin HM, Jeong H, Moon EJ, Math RK, Lee K, Kim HJ, Jeon CO, Oh TK, Kim JF.
J Bacteriol.(2011)
Genome-wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods.
Han MJ, Yun H, Lee JW, Lee YH, Lee SY, Yoo JS, Kim JY, Kim JF, Hur CG.
Proteomics. (2011)
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G 3rd, San Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P, Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD, Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X, Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P, Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT.
J Bacteriol. (2011)
The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli.
Archer CT, Kim JF, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK.
BMC Genomics. (2011)
2010
Draft genome sequence of Streptomyces clavuligerus NRRL 3585, a producer of diverse secondary metabolites.
Song JY, Jeong H, Yu DS, Fischbach MA, Park HS, Kim JJ, Seo JS, Jensen SE, Oh TK, Lee KJ, Kim JF.
J Bacteriol. (2010)
Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.
Kim JF, Jeong H, Park SY, Kim SB, Park YK, Choi SK, Ryu CM, Hur CG, Ghim SY, Oh TK, Kim JJ, Park CS, Park SH.
J Bacteriol. (2010)
Secretory production of recombinant proteins in Escherichia coli.
Yoon SH, Kim SK, Kim JF.
Recent Pat Biotechnol. (2010)
Genome-wide screening and identification of factors affecting the biosynthesis of prodigiosin by Hahella chejuensis, using Escherichia coli as a surrogate host.
Kwon SK, Park YK, Kim JF.
Appl Environ Microbiol. (2010)
Characterization of an adenylate cyclase gene (cyaB) deletion mutant of Corynebacterium glutamicum ATCC 13032.
Cha PH, Park SY, Moon MW, Subhadra B, Oh TK, Kim E, Kim JF, Lee JK.
Appl Microbiol Biotechnol. (2010)
2009
Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF.
Nature.(2009)
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).
Jeong H, Barbe V, Lee CH, Vallenet D, Yu DS, Choi SH, Couloux A, Lee SW, Yoon SH, Cattolico L, Hur CG, Park HS, Ségurens B, Kim SC, Oh TK, Lenski RE, Studier FW, Daegelen P, Kim JF.
J Mol Biol.(2009)
Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes.
Studier FW, Daegelen P, Lenski RE, Maslov S, Kim JF.
J Mol Biol. (2009)
Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3).
Daegelen P, Studier FW, Lenski RE, Cure S, Kim JF.
J Mol Biol. (2009)
Evolution of ribosomal DNA-derived satellite repeat in tomato genome.
Jo SH, Koo DH, Kim JF, Hur CG, Lee S, Yang TJ, Kwon SY, Choi D.
BMC Plant Biol. (2009)
Identification of a polymyxin synthetase gene cluster of Paenibacillus polymyxa and heterologous expression of the gene in Bacillus subtilis.
Choi SK, Park SY, Kim R, Kim SB, Lee CH, Kim JF, Park SH.
J Bacteriol. (2009)
Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.
Kim JF, Jeong H, Yu DS, Choi SH, Hur CG, Park MS, Yoon SH, Kim DW, Ji GE, Park HS, Oh TK.
J Bacteriol. (2009)
2008
Red to red - the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms.
Kim D, Kim JF, Yim JH, Kwon SK, Lee CH, Lee HK.
J Microbiol Biotechnol. (2008)
Recent progress of microbial genome projects in Korea.
Jeong H, Yoon SH, Yu DS, Oh TK, Kim JF.
Biotechnol J. (2008)
Complete genome sequence of Leuconostoc citreum KM20.
Kim JF, Jeong H, Lee JS, Choi SH, Ha M, Hur CG, Kim JS, Lee S, Park HS, Park YH, Oh TK.
J Bacteriol. (2008)
Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681.
Choi SK, Park SY, Kim R, Lee CH, Kim JF, Park SH.
Biochem Biophys Res Commun. (2008)
CFGP: a web-based, comparative fungal genomics platform.
Park J, Park B, Jung K, Jang S, Yu K, Choi J, Kong S, Park J, Kim S, Kim H, Kim S, Kim JF, Blair JE, Lee K, Kang S, Lee YH.
Nucleic Acids Res.(2008)
2007
Two bacterial entophytes eliciting both plant growth promotion and plant defense on pepper (Capsicum annuum L.).
Kang SH, Cho HS, Cheong H, Ryu CM, Kim JF, Park SH.
J Microbiol Biotechnol. (2007)
Ensemble learning of genetic networks from time-series expression data.
Nam D, Yoon SH, Kim JF.
Bioinformatics. (2007)
Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium.
Cho HS, Park SY, Ryu CM, Kim JF, Kim JG, Park SH.
FEMS Microbiol Ecol. (2007)
Towards pathogenomics: a web-based resource for pathogenicity islands.
Yoon SH, Park YK, Lee S, Choi D, Oh TK, Hur CG, Kim JF.
Nucleic Acids Res. [Database issue] (2007)
2006
PR genes of apple: identification and expression in response to elicitors and inoculation with Erwinia amylovora.
Bonasera JM, Kim JF, Beer SV.
BMC Plant Biol.(2006)
MELDB: a database for microbial esterases and lipases.
Kang HY, Kim JF, Kim MH, Park SH, Oh TK, Hur CG.
FEBS Lett. (2006)
Apple proteins that interact with DspA/E, a pathogenicity effector of Erwinia amylovora, the fire blight pathogen.
Meng X, Bonasera JM, Kim JF, Nissinen RM, Beer SV.
Mol Plant Microbe Interact. (2006)
2005
Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.
Jeong H, Yim JH, Lee C, Choi SH, Park YK, Yoon SH, Hur CG, Kang HY, Kim D, Lee HH, Park KH, Park SH, Park HS, Lee HK, Oh TK, Kim JF.
Nucleic Acids Res. (2005)
A computational approach for identifying pathogenicity islands in prokaryotic genomes.
Yoon SH, Hur CG, Kang HY, Kim YH, Oh TK, Kim JF.
BMC Bioinformatics. (2005)
The Hrp pathogenicity island of Erwinia amylovora and identification of three novel genes required for systemic infectiondouble dagger.
Oh CS, Kim JF, Beer SV.
Mol Plant Pathol. (2005)
2004
The Erwinia chrysanthemi EC16 hrp/hrc gene cluster encodes an active Hrp type III secretion system that is flanked by virulence genes functionally unrelated to the Hrp system.
Rojas CM, Ham JH, Schechter LM, Kim JF, Beer SV, Collmer A.
Mol Plant Microbe Interact. (2004)