How to use this heatmap:
Drag cells above heatmap to view detailed gene information including Gene IDs .
Gene IDs in the table below: Representative gene IDs from gene families defined by COMPARATIVE_ANNOTATION.All of gene sequecnes of DNA and amino acid in a gene family could be retrieved in Sequence Family Finder tab with Gene IDs.
Copy interested Gene IDs and utilize it in Sequence Family Finder and Gene Tree Generator.
Use the toolbar above the heatmap for additional options.
Selected Module Information
Full KO Gene Table
Welcome to metaFun INTERACTIVE_ANNOTATOR viewer
This tool allows you to visualize and analyze gene data in species genomes and draw phylogenetic trees .
To get started, select one of the functional datasets and a metadata column for visualization, then click 'Generate Heatmap' button on the left sidebar.
Once the heatmap is generated, you can drag the heatmap area to identify detailed information of genes.
Metadata Overview
Column Distribution Visualization
Please enter the sequence headers of gene families in the 'Enter sequence header(s):' box at the left side panel.
You can identify sequence header(s) in one of the following tabs: 'Heatmap' , 'Data for heatmap' , or 'Annotation result table' .
'Search' button can retrieve all DNA and amino acid sequences and metadata of entered gene families.By clicking 'Draw Phylogenetic Tree' button, the tab is automatically converted to 'Gene Tree Generator' tab.
To utilize 'Gene Tree Generator' tab, You should have to search sequences first with headers in this tab .
In the 'Gene Tree Generator' tab, you could draw phylogenetic tree with gene sequences of DNA or amino acid with metadata of your interest.
You can also retrieve genomic sequences and metadata. Please write down base name of files and click 'Save to Server' button.
Select genes in 'Sequence Family Finder' tab. 'Search' button and click the 'Draw Phylogenetic Tree' button.
Interactive Phylogenetic Tree
Metadata of Selected Sequences