Publications
Genome-wide screening and identification of factors affecting the biosynthesis of prodigiosin by Hahella chejuensis, using Escherichia coli as a surrogate host.
Kwon SK, Park YK, Kim JF. Appl Environ Microbiol. (2010)
PMID
Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. Nature.(2009)
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).
Jeong H, Barbe V, Lee CH, Vallenet D, Yu DS, Choi SH, Couloux A, Lee SW, Yoon SH, Cattolico L, Hur CG, Park HS, Ségurens B, Kim SC, Oh TK, Lenski RE, Studier FW, Daegelen P, Kim JF. J Mol Biol.(2009)
Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes.
Studier FW, Daegelen P, Lenski RE, Maslov S, Kim JF. J Mol Biol. (2009)
Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3).
Daegelen P, Studier FW, Lenski RE, Cure S, Kim JF. J Mol Biol. (2009)
Characterization of an adenylate cyclase gene (cyaB) deletion mutant of Corynebacterium glutamicum ATCC 13032.
Cha PH, Park SY, Moon MW, Subhadra B, Oh TK, Kim E, Kim JF, Lee JK. Appl Microbiol Biotechnol. (2010)
Evolution of ribosomal DNA-derived satellite repeat in tomato genome.
Jo SH, Koo DH, Kim JF, Hur CG, Lee S, Yang TJ, Kwon SY, Choi D. BMC Plant Biol. (2009)
Identification of a polymyxin synthetase gene cluster of Paenibacillus polymyxa and heterologous expression of the gene in Bacillus subtilis.
Choi SK, Park SY, Kim R, Kim SB, Lee CH, Kim JF, Park SH. J Bacteriol. (2009)
Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.
Kim JF, Jeong H, Yu DS, Choi SH, Hur CG, Park MS, Yoon SH, Kim DW, Ji GE, Park HS, Oh TK. J Bacteriol. (2009)
Red to red - the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms.
Kim D, Kim JF, Yim JH, Kwon SK, Lee CH, Lee HK. J Microbiol Biotechnol. (2008)
Recent progress of microbial genome projects in Korea.
Jeong H, Yoon SH, Yu DS, Oh TK, Kim JF. Biotechnol J. (2008)
Complete genome sequence of Leuconostoc citreum KM20.
Kim JF, Jeong H, Lee JS, Choi SH, Ha M, Hur CG, Kim JS, Lee S, Park HS, Park YH, Oh TK. J Bacteriol. (2008)
Two bacterial entophytes eliciting both plant growth promotion and plant defense on pepper (Capsicum annuum L.).
Kang SH, Cho HS, Cheong H, Ryu CM, Kim JF, Park SH. J Microbiol Biotechnol. (2007)
Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681.
Choi SK, Park SY, Kim R, Lee CH, Kim JF, Park SH. Biochem Biophys Res Commun. (2008)
Ensemble learning of genetic networks from time-series expression data.
Nam D, Yoon SH, Kim JF. Bioinformatics. (2007)
CFGP: a web-based, comparative fungal genomics platform.
Park J, Park B, Jung K, Jang S, Yu K, Choi J, Kong S, Park J, Kim S, Kim H, Kim S, Kim JF, Blair JE, Lee K, Kang S, Lee YH. Nucleic Acids Res.(2008)
Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium.
Cho HS, Park SY, Ryu CM, Kim JF, Kim JG, Park SH. FEMS Microbiol Ecol. (2007)
Towards pathogenomics: a web-based resource for pathogenicity islands.
Yoon SH, Park YK, Lee S, Choi D, Oh TK, Hur CG, Kim JF. Nucleic Acids Res. [Database issue] (2007)
PR genes of apple: identification and expression in response to elicitors and inoculation with Erwinia amylovora.
Bonasera JM, Kim JF, Beer SV. BMC Plant Biol.(2006)
MELDB: a database for microbial esterases and lipases.
Kang HY, Kim JF, Kim MH, Park SH, Oh TK, Hur CG. FEBS Lett. (2006)
Apple proteins that interact with DspA/E, a pathogenicity effector of Erwinia amylovora, the fire blight pathogen.
Meng X, Bonasera JM, Kim JF, Nissinen RM, Beer SV. Mol Plant Microbe Interact. (2006)
Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.
Jeong H, Yim JH, Lee C, Choi SH, Park YK, Yoon SH, Hur CG, Kang HY, Kim D, Lee HH, Park KH, Park SH, Park HS, Lee HK, Oh TK, Kim JF. Nucleic Acids Res. (2005)
A computational approach for identifying pathogenicity islands in prokaryotic genomes.
Yoon SH, Hur CG, Kang HY, Kim YH, Oh TK, Kim JF. BMC Bioinformatics. (2005)
The Hrp pathogenicity island of Erwinia amylovora and identification of three novel genes required for systemic infectiondouble dagger.
Oh CS, Kim JF, Beer SV. Mol Plant Pathol. (2005)
The Erwinia chrysanthemi EC16 hrp/hrc gene cluster encodes an active Hrp type III secretion system that is flanked by virulence genes functionally unrelated to the Hrp system.
Rojas CM, Ham JH, Schechter LM, Kim JF, Beer SV, Collmer A. Mol Plant Microbe Interact. (2004)
