Publications
Genome information of Methylobacterium oryzae, a plant-probiotic methylotroph in the phyllosphere.
Kwak MJ, Jeong H, Madhaiyan M, Lee Y, Sa TM, Oh TK, Kim JF. PLoS One. (2014)
PMID
Sulfitobacter geojensis sp. nov., Sulfitobacter noctilucae sp. nov., and Sulfitobacter noctilucicola sp. nov., isolated from coastal seawater.
Kwak MJ, Lee JS, Lee KC, Kim KK, Eom MK, Kim BK, Kim JF. Int J Syst Evol Microbiol. (2014)
Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods.
Eun CS, Kim BK, Han DS, Kim SY, Kim KM, Choi BY, Song KS, Kim YS, Kim JF. Helicobacter. (2014)
An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis.
Lee HJ, Kim IJ, Kim JF, Choi IG, Kim KH. Bioresour Technol. (2013)
Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.
Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK. J Microbiol Biotechnol. (2013)
Charting microbial phenotypes in multiplex nanoliter batch bioreactors.
Dai J, Yoon SH, Sim HY, Yang YS, Oh TK, Kim JF, Hong JW. Anal Chem. (2013)
Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.
Kwon SK, Kim BK, Song JY, Kwak MJ, Lee CH, Yoon JH, Oh TK, Kim JF. Genome Biol Evol. (2013)
Genome sequence of the agar-degrading marine bacterium Alteromonadaceae sp. strain G7.
Kwak MJ, Song JY, Kim BK, Chi WJ, Kwon SK, Choi S, Chang YK, Hong SK, Kim JF. J Bacteriol. (2012)
Genome sequence of the thermotolerant yeast Kluyveromyces marxianus var. marxianus KCTC 17555.
Jeong H, Lee DH, Kim SH, Kim HJ, Lee K, Song JY, Kim BK, Sung BH, Park JC, Sohn JH, Koo HM, Kim JF. Eukaryot Cell. (2012)
Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67.
Song JY, Kwak MJ, Lee KY, Kong HG, Kim BK, Kwon SK, Lee SW, Kim JF. J Bacteriol. (2012)
Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.
Yu DS, Jeong H, Lee DH, Kwon SK, Song JY, Kim BK, Park MS, Ji GE, Oh TK, Kim JF. J Bacteriol. (2012)
Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006.
Kwak MJ, Song JY, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Park SH, Kim JF. J Bacteriol. (2012)
Genome sequence of an oligohaline hyperthermophilic archaeon, Thermococcus zilligii AN1, isolated from a terrestrial geothermal freshwater spring.
Kim BK, Lee SH, Kim SY, Jeong H, Kwon SK, Lee CH, Song JY, Yu DS, Kang SG, Kim JF. J Bacteriol. (2012)
Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. strain JS.
Song JY, Kim HA, Kim JS, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Kim BS, Kim SH, Kwon SY, Kim JF. J Bacteriol. (2012)
Genome sequence of the leaf-colonizing Bacterium Bacillus sp. strain 5B6, isolated from a cherry tree.
Kim BK, Chung JH, Kim SY, Jeong H, Kang SG, Kwon SK, Lee CH, Song JY, Yu DS, Ryu CM, Kim JF. J Bacteriol. (2012)
Genome sequence of the Shiga toxin-producing Escherichia coli strain NCCP15657.
Kim BK, Song GC, Hong GH, Seong WK, Kim SY, Jeong H, Kang SG, Kwon SK, Lee CH, Song JY, Yu DS, Park MS, Cho SH, Kim JF. J Bacteriol.(2012)
Genome sequence of enterohemorrhagic Escherichia coli NCCP15658.
Song JY, Yoo RH, Jang SY, Seong WK, Kim SY, Jeong H, Kang SG, Kim BK, Kwon SK, Lee CH, Yu DS, Park MS, Cho SH, Kim JF. J Bacteriol.(2012)
Genome sequence of the hemolytic-uremic syndrome-causing strain Escherichia coli NCCP15647.
Jeong H, Zhao F, Igori D, Oh KH, Kim SY, Kang SG, Kim BK, Kwon SK, Lee CH, Song JY, Yu DS, Park MS, Cho SH, Kim JF. J Bacteriol.(2012)
Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone.
Brulois KF, Chang H, Lee AS, Ensser A, Wong LY, Toth Z, Lee SH, Lee HR, Myoung J, Ganem D, Oh TK, Kim JF, Gao SJ, Jung JU. J Virol. (2012)
Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches.
Yu DS, Lee DH, Kim SK, Lee CH, Song JY, Kong EB, Kim JF. J Microbiol Biotechnol. (2012)
Comparative multi-omics systems analysis of Escherichia coli strains B and K-12.
Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, Kim JF. Genome Biol. (2012)
Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.
Kim BK, Jung MY, Yu DS, Park SJ, Oh TK, Rhee SK, Kim JF. J Bacteriol. (2011)
Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.
Jeong H, Park SY, Chung WH, Kim SH, Kim N, Park SH, Kim JF. J Bacteriol. (2011)
Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2.
Jin HM, Jeong H, Moon EJ, Math RK, Lee K, Kim HJ, Jeon CO, Oh TK, Kim JF. J Bacteriol.(2011)
Genome-wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods.
Han MJ, Yun H, Lee JW, Lee YH, Lee SY, Yoo JS, Kim JY, Kim JF, Hur CG. Proteomics. (2011)
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G 3rd, San Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P, Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD, Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X, Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P, Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT. J Bacteriol. (2011)
The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli.
Archer CT, Kim JF, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK. BMC Genomics. (2011)
Draft genome sequence of Streptomyces clavuligerus NRRL 3585, a producer of diverse secondary metabolites.
Song JY, Jeong H, Yu DS, Fischbach MA, Park HS, Kim JJ, Seo JS, Jensen SE, Oh TK, Lee KJ, Kim JF. J Bacteriol. (2010)
Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.
Kim JF, Jeong H, Park SY, Kim SB, Park YK, Choi SK, Ryu CM, Hur CG, Ghim SY, Oh TK, Kim JJ, Park CS, Park SH. J Bacteriol. (2010)
Secretory production of recombinant proteins in Escherichia coli.
Yoon SH, Kim SK, Kim JF. Recent Pat Biotechnol. (2010)
