Publications
Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation
Lee, Younmi, et al. "Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation." Scientific reports 10.1 (2020): 1-12.
PMID
Alterations in gastric microbial communities are associated with risk of gastric cancer in a Korean population: A case-control study
Gunathilake, Madhawa, et al. "Alterations in Gastric Microbial Communities Are Associated with Risk of Gastric Cancer in a Korean Population: A Case-Control Study." Cancers 12.9 (2020): 2619.
Accelerated Growth of Corynebacterium glutamicum by Up-Regulating Stress- Responsive Genes Based on Transcriptome Analysis of a Fast-Doubling Evolved Strain
Park, Jihoon, et al. "Accelerated growth of Corynebacterium glutamicum by up-regulating stress-responsive genes based on transcriptome analysis of a fast-doubling evolved strain." Journal of Microbiology and Biotechnology (2020).
Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins
Kwon, Soon-Kyeong, Sung-Hoon Jun, and Jihyun F. Kim. "Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins." Journal of Microbiology and Biotechnology 30.5 (2020): 633-641.
Bioinformatics services for analyzing massive genomic datasets
Ko, Gunhwan, et al. "Bioinformatics services for analyzing massive genomic datasets." Genomics & Informatics 18.1 (2020).
Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity
Lee, Youngjin, et al. "Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity." Proceedings of the National Academy of Sciences 116.36 (2019): 18031-18040.
Consent insufficient for data release Response
Amann, Rudolf I., et al. "Consent insufficient for data release—Response." Science 364.6439 (2019): 446-446.
Data access: Toward unrestricted use of public genomic data
Amann, Rudolf I., et al. "Toward unrestricted use of public genomic data." Science 363.6425 (2019): 350-352.
Rhizosphere microbiome structure alters to enable wilt resistance in tomato.
Kwak MJ, Kong HG, Choi K, Kwon SK, Song JY, Lee J, Lee PA, Choi SY, Seo M, Lee HJ, Jung EJ, Park H, Roy N, Kim H, Lee MM, Rubin EM, Lee SW, Kim JF. Nat Biotechnol. (2018)
Genome Information of Maribacter dokdonensis DSW-8 and Comparative Analysis with Other Maribacter Genomes.
Kwak MJ, Lee J, Kwon SK, Kim JF. J Microbiol Biotechnol. (2017)
Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5.
Yoon K, Song JY, Kwak MJ, Kwon SK, Kim JF. J Microbiol. (2017)
Complete genome sequence of the sand-sediment actinobacterium Nocardioides dokdonensis FR1436T.
Kwak MJ, Kwon SK, Kim JF. Stand Genomic Sci. (2017)
Tunable Control of an Escherichia coli Expression System for the Overproduction of Membrane Proteins by Titrated Expression of a Mutant lac Repressor.
Kim SK, Lee DH, Kim OC, Kim JF, Yoon SH. ACS Synth Biol. (2017)
Genomic and transcriptomic landscape of Escherichia coli BL21(DE3).
Kim S, Jeong H, Kim EY, Kim JF, Lee SY, Yoon SH. Nucleic Acids Res. (2017)
Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function
Kwak MJ, Kwon SK, Yoon JK, Song JY, Seo JG, Chung MJ, Kim JF. Syst Appl Microbiol. (2016)
Genome Sequence of Porphyrobacter dokdonensis DSW-74(T), Isolated from Seawater off Dokdo in the East Sea (Sea of Korea)
Song JY, Hong J, Kwak MJ, Kwon SK, Kim JF. Genome Announc. (2016)
Crystal structure and functional characterization of a light-driven chloride pump having an NTQ motif
Kim K, Kwon SK, Jun SH, Cha JS, Kim H, Lee W, Kim JF*, Cho HS*. Nat Commun. (2016)
Complete Genome Sequence of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia donghaensis DSW-1(T), Isolated from Seawater off Dokdo in the East Sea (Sea of Korea)
Kim K, Kwon SK, Yoon JH, Kim JF. Genome Announc. (2016)
Does the intestinal microbial community of Korean Crohn's disease patients differ from that of western patients?
Eun CS, Kwak MJ, Han DS, Lee AR, Park DI, Yang SK, Kim YS, Kim JF. BMC Gastroenterol. (2016)
Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient.
Kwak MJ, Kim MS, Kwon SK, Cho SH, Kim JF. Gut Pathog. (2016)
Complete genome sequence of Streptomyces venezuelae ATCC 15439, a promising cell factory for production of secondary metabolites.
Song JY, Yoo YJ, Lim SK, Cha SH, Kim JE, Roe JH, Kim JF, Yoon YJ. J Biotechnol. (2016)
Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea.
Kwak MJ, Kwon SK, Yoon JH, Kim JF. Stand Genomic Sci. (2015)
Genome sequence of the marine flavobacterium Croceitalea dokdonensis DOKDO 023 that contains proton- and sodium-pumping rhodopsins.
Kwon SK, Lee HG, Kwak MJ, Kim JF. Mar Genomics. (2015)
Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction.
Kwon SK, Kim SK, Lee DH, Kim JF. Sci Rep. (2015)
Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant.
Kwak MJ, Yoon JK, Kwon SK, Chung MJ, Seo JG, Kim JF. J Biotechnol. (2015)
Complete genome sequence of Bifidobacterium longum KCTC 12200BP, a probiotic strain promoting the intestinal health.
Kwon SK, Kwak MJ, Seo JG, Chung MJ, Kim JF. J Biotechnol. (2015)
Microbial and biochemical basis of a Fusarium wilt-suppressive soil.
Cha JY, Han S, Hong HJ, Cho H, Kim D, Kwon Y, Kwon SK, Crüsemann M, Bok Lee Y, Kim JF, Giaever G, Nislow C, Moore BS, Thomashow LS, Weller DM, Kwak YS. ISME J. (2016)
Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656.
Kwak MJ, Kwon SK, Cho SH, Kim JF. Gut Pathog. (2015)
Growth retardation of Escherichia coli by artificial increase of intracellular ATP.
Na YA, Lee JY, Bang WJ, Lee HJ, Choi SI, Kwon SK, Jung KH, Kim JF, Kim P. J Ind Microbiol Biotechnol. (2015)
PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands.
Yoon SH, Park YK, Kim JF. Nucleic Acids Res. [Database issue] (2015)
